Labor Day is in the rearview mirror, kids are back to school, and a squall of pumpkin spice is upon us. It's that time again to prepare for the equally inevitable respiratory virus season with annual vaccines.

With fervent anti-vaccine activist Robert F. Kennedy Jr. as the country's top health official, it might seem like the rollout of this year's shots could be a disaster. For instance, one of Kennedy's first actions as health secretary last year was to obliterate an ad campaign for flu shots amid a particularly deadly flu season. As we head into this fall, the Centers for Disease Control and Prevention's vaccine advisory committee—which normally sets vaccination recommendations and insurance coverage for the shots—is nonfunctioning. A federal judge ruled in March that the anti-vaccine allies Kennedy installed on the panel were illegally appointed and unfit to serve. All their changes to vaccine policy have been temporarily voided. And meanwhile, Kennedy spent last week trying to obscure the number of babies who died from measles so far this year (it was two, including a newborn).

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Despite all of that, the fall vaccine effort is looking like it will likely be somewhat smooth, potentially unremarkable even. The Food and Drug Administration has approved updated flu and COVID-19 shots for this season. Those shots have already begun arriving at pharmacies—in case your pharmacy hasn't already sent you multiple texts and reminders. While there are still some snags for access, it seems like it will be a lot like last year's fall vaccine rollout.

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The Centers for Disease Control and Prevention is excluding two measles deaths reported by Pennsylvania health officials last week from its latest update of national measles data. The move publicly challenges the accuracy of the state's death determinations in an extraordinary move that breaks precedent that states are the arbiters of case and death determinations, not the CDC.

The New York Times reported Monday that the CDC's new director, Erica Schwartz, is behind the decision. Schwartz—less than a month into the job—reportedly ordered CDC staff to add an unusual statement onto the CDC's website for measles surveillance data. The statement notes that the update will not include the deaths reported by Pennsylvania and continues: "At this time, available information does not establish whether measles caused or contributed to the deaths or whether the individuals died from other causes while infected with measles."

The Washington Post reported Monday that the CDC had actually changed the information provided on that page multiple times over the weekend. On August 29 at 2:33 pm ET, the website listed the total measles deaths for 2026 as "0" in a chart. On August 30 at 12:09 pm ET, the chart was updated to list the total deaths for 2026 as "2." There was also a note underneath the chart that read: "Health departments make determinations about measles-associated deaths and share relevant information with CDC." By 3:23 pm ET on August 30, the chart was changed again to delete the two deaths, replacing them with an asterisk as a reference to the unusual statement about the deaths not being included. The asterisk and statement remain as of Tuesday.

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Florida's attorney general got a fiery rebuke and some ecclesiastical schooling from the state's Catholic bishops after he boldly threatened to block funding to Catholic schools unless the church bends to the state's anti-vaccine policies—policies allegedly intended to uphold religious freedom.

On July 31, Attorney General James Uthmeier sent a questionable letter to the bishops regarding exemptions to school vaccination requirements. Florida law requires public and private schools to allow vaccination exemptions based on religious grounds. But Catholic schools in the state do not accept religious exemptions; Florida's Catholic dioceses support vaccination and recognize no theological argument against it. The schools only accept exemptions based on medical conditions that are verified by a healthcare provider.

Uthmeier, himself a Catholic, wrote to the bishops in an open letter that, based on his own understanding of Catholicism, he saw "no legitimate religious reason to refuse granting religious exemptions." He reviewed select theological positions regarding the use of "abortion-derived vaccines," and suggested to the bishops that it was "morally reprehensible" that they not grant religious exemptions.

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